Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02264.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 407

Length: 679
ACGTcount: A:0.24, C:0.28, G:0.15, T:0.34


Found at i:325 original size:18 final size:19

Alignment explanation


    Indices: 302--347  Score: 51
    Period size: 21  Copynumber: 2.4  Consensus size: 19

        292 AACCCCTTCT

                                
        302 TCAATGG-CACCAACC-CCA
          1 TCAATGGTCACC-ACCGCCA

                                 
        320 TCAATGAGTTCACCACCGCCA
          1 TCAATG-G-TCACCACCGCCA

                   
        341 TCAATGG
          1 TCAATGG

        348 GTCCTTCTCC


Statistics
Matches: 24,  Mismatches: 0, Indels: 6
        0.80            0.00        0.20

Matches are distributed among these distances:
  18    6  0.25
  19    1  0.04
  20    4  0.17
  21   13  0.54

ACGTcount: A:0.30, C:0.37, G:0.15, T:0.17


Consensus pattern (19 bp):   
TCAATGGTCACCACCGCCA
Done.