Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02266.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 706

Length: 1177
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.33


Found at i:294 original size:13 final size:14

Alignment explanation


    Indices: 276--304  Score: 51
    Period size: 13  Copynumber: 2.1  Consensus size: 14

        266 GTTGAATTTT

                          
        276 TTTTTGTTT-TGGG
          1 TTTTTGTTTGTGGG

                          
        289 TTTTTGTTTGTGGG
          1 TTTTTGTTTGTGGG

              
        303 TT
          1 TT

        305 GTTTTGATTG


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13    9  0.60
  14    6  0.40

ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69


Consensus pattern (14 bp):   
TTTTTGTTTGTGGG
Done.