Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02281.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 980

Length: 1634
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.30


Found at i:175 original size:14 final size:15

Alignment explanation


    Indices: 149--179  Score: 55
    Period size: 14  Copynumber: 2.1  Consensus size: 15

        139 AATAAAATCC

                           
        149 AAATATAAAATAAAT
          1 AAATATAAAATAAAT

                           
        164 AAATAT-AAATAAAT
          1 AAATATAAAATAAAT

              
        178 AA
          1 AA

        180 TAATGGGTTA


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14   10  0.62
  15    6  0.38

ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26


Consensus pattern (15 bp):   
AAATATAAAATAAAT
Done.