Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02287.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3665
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29


Found at i:3042 original size:128 final size:128

Alignment explanation


    Indices: 2809--3055  Score: 422
    Period size: 128  Copynumber: 1.9  Consensus size: 128

       2799 CTTCACGTGA

                             *                                               
       2809 TCAAACTATGGTTTCAATGATGAGTTCATATAAGAAACACCTAACAGATGTTTCTTCAATGAAGC
          1 TCAAACTATGGTTTCAACGATGAGTTCATATAAGAAACACCTAACAGATGTTTCTTCAATGAAGC

                                **                                         
       2874 ATGGAGAAATCGTTTCCCATTGGGAATTGATTTTACGGAACCAACTATTGCATCAAACGCTGG
         66 ATGGAGAAATCGTTTCCCATCAGGAATTGATTTTACGGAACCAACTATTGCATCAAACGCTGG

                                                      *                      
       2937 TCAAACTATGGTTTCAACGATGAGTTCATATAAGAAACACCTGACAGATGTTTCTTCAATGAAGC
          1 TCAAACTATGGTTTCAACGATGAGTTCATATAAGAAACACCTAACAGATGTTTCTTCAATGAAGC

                  *    *                      **                  
       3002 ATGGAGCAATCTTTTCCCATCAGGAATTGATTTTGTGGAACCAACTATTGCATC
         66 ATGGAGAAATCGTTTCCCATCAGGAATTGATTTTACGGAACCAACTATTGCATC

       3056 GAACACTGTC


Statistics
Matches: 111,  Mismatches: 8, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
 128  111  1.00

ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30


Consensus pattern (128 bp):   
TCAAACTATGGTTTCAACGATGAGTTCATATAAGAAACACCTAACAGATGTTTCTTCAATGAAGC
ATGGAGAAATCGTTTCCCATCAGGAATTGATTTTACGGAACCAACTATTGCATCAAACGCTGG
Done.