Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00660.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 556

Length: 927
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35


Found at i:219 original size:11 final size:11

Alignment explanation


    Indices: 203--233  Score: 53
    Period size: 11  Copynumber: 2.7  Consensus size: 11

        193 CCCCCTCCCA

                       
        203 AAAAAAAAAAG
          1 AAAAAAAAAAG

                       
        214 AAAAAAAAAAG
          1 AAAAAAAAAAG

                     
        225 AAAAGAAAA
          1 AAAA-AAAA

        234 CATGACAAAC


Statistics
Matches: 19,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  11   15  0.79
  12    4  0.21

ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00


Consensus pattern (11 bp):   
AAAAAAAAAAG

Found at i:223 original size:16 final size:16

Alignment explanation


    Indices: 202--233  Score: 55
    Period size: 16  Copynumber: 2.0  Consensus size: 16

        192 CCCCCCTCCC

                            
        202 AAAAAAAAAAAGAAAA
          1 AAAAAAAAAAAGAAAA

                  *         
        218 AAAAAAGAAAAGAAAA
          1 AAAAAAAAAAAGAAAA

        234 CATGACAAAC


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   15  1.00

ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00


Consensus pattern (16 bp):   
AAAAAAAAAAAGAAAA
Done.