Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02295.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3074
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.35


Found at i:2527 original size:15 final size:16

Alignment explanation


    Indices: 2507--2539  Score: 59
    Period size: 15  Copynumber: 2.1  Consensus size: 16

       2497 TATTATTTTT

                            
       2507 AATATATATGAT-TAA
          1 AATATATATGATCTAA

                            
       2522 AATATATATGATCTAA
          1 AATATATATGATCTAA

              
       2538 AA
          1 AA

       2540 GCAAGAGAGA


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  15   12  0.71
  16    5  0.29

ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36


Consensus pattern (16 bp):   
AATATATATGATCTAA
Done.