Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00664.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3066
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.31


Found at i:849 original size:33 final size:33

Alignment explanation


    Indices: 802--868  Score: 116
    Period size: 33  Copynumber: 2.0  Consensus size: 33

        792 GAAGGGAGCA

                                         *   
        802 AGGACAATGCGTCATTTGGCAAGTAACAGGTGG
          1 AGGACAATGCGTCATTTGGCAAGTAACAGCTGG

                     *                       
        835 AGGACAATGTGTCATTTGGCAAGTAACAGCTGG
          1 AGGACAATGCGTCATTTGGCAAGTAACAGCTGG

             
        868 A
          1 A

        869 CTAACTAATT


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  33   32  1.00

ACGTcount: A:0.31, C:0.15, G:0.31, T:0.22


Consensus pattern (33 bp):   
AGGACAATGCGTCATTTGGCAAGTAACAGCTGG
Done.