Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02321.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2665
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34


Found at i:715 original size:17 final size:15

Alignment explanation


    Indices: 693--726  Score: 50
    Period size: 17  Copynumber: 2.1  Consensus size: 15

        683 TCAACACTGC

                             
        693 TTTTCTTTTCTTTTCTT
          1 TTTTCTTTT-TTTT-TT

                           
        710 TTTTCTTTTTTTTTT
          1 TTTTCTTTTTTTTTT

              
        725 TT
          1 TT

        727 GCTCTCTATT


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  15    4  0.24
  16    4  0.24
  17    9  0.53

ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88


Consensus pattern (15 bp):   
TTTTCTTTTTTTTTT
Done.