Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02332.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2693
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.35


Found at i:274 original size:9 final size:9

Alignment explanation


    Indices: 260--286  Score: 54
    Period size: 9  Copynumber: 3.0  Consensus size: 9

        250 TGGAGACCGG

                     
        260 ATTCAAGGA
          1 ATTCAAGGA

                     
        269 ATTCAAGGA
          1 ATTCAAGGA

                     
        278 ATTCAAGGA
          1 ATTCAAGGA

        287 TGATTTCAAG


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   18  1.00

ACGTcount: A:0.44, C:0.11, G:0.22, T:0.22


Consensus pattern (9 bp):   
ATTCAAGGA
Done.