Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02355.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2885
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36


Found at i:2608 original size:29 final size:29

Alignment explanation


    Indices: 2566--2625  Score: 120
    Period size: 29  Copynumber: 2.1  Consensus size: 29

       2556 TCAAATTTGT

                                         
       2566 ACGCTACATGGATGACTATAGTTTTTCCG
          1 ACGCTACATGGATGACTATAGTTTTTCCG

                                         
       2595 ACGCTACATGGATGACTATAGTTTTTCCG
          1 ACGCTACATGGATGACTATAGTTTTTCCG

              
       2624 AC
          1 AC

       2626 CAGTATGACA


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   31  1.00

ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33


Consensus pattern (29 bp):   
ACGCTACATGGATGACTATAGTTTTTCCG
Done.