Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02356.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1932
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37


Found at i:1655 original size:29 final size:29

Alignment explanation


    Indices: 1613--1672  Score: 120
    Period size: 29  Copynumber: 2.1  Consensus size: 29

       1603 TCAAATTTGT

                                         
       1613 ACGCTACATGGATGACTATAGTTTTTCCG
          1 ACGCTACATGGATGACTATAGTTTTTCCG

                                         
       1642 ACGCTACATGGATGACTATAGTTTTTCCG
          1 ACGCTACATGGATGACTATAGTTTTTCCG

              
       1671 AC
          1 AC

       1673 CAGTATGACA


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   31  1.00

ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33


Consensus pattern (29 bp):   
ACGCTACATGGATGACTATAGTTTTTCCG
Done.