Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02356.C2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 804

Length: 1341
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.34


Found at i:1064 original size:29 final size:29

Alignment explanation


    Indices: 1022--1081  Score: 120
    Period size: 29  Copynumber: 2.1  Consensus size: 29

       1012 TCAAATTTGT

                                         
       1022 ACGCTACATGGATGACTATAGTTTTTCCG
          1 ACGCTACATGGATGACTATAGTTTTTCCG

                                         
       1051 ACGCTACATGGATGACTATAGTTTTTCCG
          1 ACGCTACATGGATGACTATAGTTTTTCCG

              
       1080 AC
          1 AC

       1082 CAGTATGACA


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   31  1.00

ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33


Consensus pattern (29 bp):   
ACGCTACATGGATGACTATAGTTTTTCCG
Done.