Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02362.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2578
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.29


Found at i:262 original size:20 final size:21

Alignment explanation


    Indices: 224--264  Score: 57
    Period size: 20  Copynumber: 2.0  Consensus size: 21

        214 TTCTTCACAA

                          *      
        224 AATTTTCTCTTCTTTTTCTCT
          1 AATTTTCTCTTCTTCTTCTCT

                       *         
        245 AATTTT-TCTTGTTCTTCTCT
          1 AATTTTCTCTTCTTCTTCTCT

        265 GCAACTTTGT


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  20   12  0.67
  21    6  0.33

ACGTcount: A:0.10, C:0.22, G:0.02, T:0.66


Consensus pattern (21 bp):   
AATTTTCTCTTCTTCTTCTCT
Done.