Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02366.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 792

Length: 1321
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31


Found at i:258 original size:13 final size:13

Alignment explanation


    Indices: 240--269  Score: 51
    Period size: 13  Copynumber: 2.3  Consensus size: 13

        230 TTCTTCCTCC

                         
        240 CCCCAAACCCAAA
          1 CCCCAAACCCAAA

                  *      
        253 CCCCAACCCCAAA
          1 CCCCAAACCCAAA

                
        266 CCCC
          1 CCCC

        270 CCCTTTCAAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  13   16  1.00

ACGTcount: A:0.37, C:0.63, G:0.00, T:0.00


Consensus pattern (13 bp):   
CCCCAAACCCAAA
Done.