Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02367.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 497

Length: 829
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36


Found at i:771 original size:26 final size:27

Alignment explanation


    Indices: 738--796  Score: 77
    Period size: 28  Copynumber: 2.2  Consensus size: 27

        728 CACTTGGACT

                          *             
        738 AAAAAAG-TTT-GTTTCTATTTGAGAAA
          1 AAAAAAGTTTTAGTATCTATTT-AGAAA

                                        
        764 AAAAAAGTTTTAAGTATCTATTTAGAAA
          1 AAAAAAGTTTT-AGTATCTATTTAGAAA

                 
        792 AAAAA
          1 AAAAA

        797 GGGAAAATTT


Statistics
Matches: 29,  Mismatches: 1, Indels: 4
        0.85            0.03        0.12

Matches are distributed among these distances:
  26    7  0.24
  27    3  0.10
  28   10  0.34
  29    9  0.31

ACGTcount: A:0.51, C:0.03, G:0.12, T:0.34


Consensus pattern (27 bp):   
AAAAAAGTTTTAGTATCTATTTAGAAA
Done.