Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02368.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 538

Length: 898
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31


Found at i:77 original size:7 final size:7

Alignment explanation


    Indices: 65--99  Score: 70
    Period size: 7  Copynumber: 5.0  Consensus size: 7

         55 CCATTCCATT

                   
         65 AGCCACC
          1 AGCCACC

                   
         72 AGCCACC
          1 AGCCACC

                   
         79 AGCCACC
          1 AGCCACC

                   
         86 AGCCACC
          1 AGCCACC

                   
         93 AGCCACC
          1 AGCCACC

        100 GGCCCATTTC


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   28  1.00

ACGTcount: A:0.29, C:0.57, G:0.14, T:0.00


Consensus pattern (7 bp):   
AGCCACC

Done.