Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02373.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6323
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32


Found at i:252 original size:12 final size:12

Alignment explanation


    Indices: 235--260  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        225 TCTTCTTAAT

                        
        235 AAAATAATGCAC
          1 AAAATAATGCAC

                        
        247 AAAATAATGCAC
          1 AAAATAATGCAC

              
        259 AA
          1 AA

        261 GTGCCTCAGT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.62, C:0.15, G:0.08, T:0.15


Consensus pattern (12 bp):   
AAAATAATGCAC

Found at i:6073 original size:6 final size:6

Alignment explanation


    Indices: 6062--6108  Score: 58
    Period size: 6  Copynumber: 7.8  Consensus size: 6

       6052 GACTTCACTA

                               *            *      *      *       
       6062 AAGCCC AAGCCC AAGCCT AAGCCC AAGCTC AAGCTC AAGCTC AAGCC
          1 AAGCCC AAGCCC AAGCCC AAGCCC AAGCCC AAGCCC AAGCCC AAGCC

       6109 TAGAAAGAAG


Statistics
Matches: 37,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   6   37  1.00

ACGTcount: A:0.34, C:0.40, G:0.17, T:0.09


Consensus pattern (6 bp):   
AAGCCC

Done.