Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02373.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4224
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.30


Found at i:3974 original size:6 final size:6

Alignment explanation


    Indices: 3963--4009  Score: 58
    Period size: 6  Copynumber: 7.8  Consensus size: 6

       3953 GACTTCACTA

                               *            *      *      *       
       3963 AAGCCC AAGCCC AAGCCT AAGCCC AAGCTC AAGCTC AAGCTC AAGCC
          1 AAGCCC AAGCCC AAGCCC AAGCCC AAGCCC AAGCCC AAGCCC AAGCC

       4010 TAGAAAGAAG


Statistics
Matches: 37,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   6   37  1.00

ACGTcount: A:0.34, C:0.40, G:0.17, T:0.09


Consensus pattern (6 bp):   
AAGCCC

Done.