Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02376.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5103
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.34


Found at i:157 original size:30 final size:30

Alignment explanation


    Indices: 121--179  Score: 84
    Period size: 30  Copynumber: 2.0  Consensus size: 30

        111 TCCTTTTGCA

                                   *       
        121 CCACCACCACCGCACTTA-TATGGTGCACCC
          1 CCACCACCACCGC-CTTACTATGCTGCACCC

                    *                    
        151 CCACCACCTCCGCCTTACTATGCTGCACC
          1 CCACCACCACCGCCTTACTATGCTGCACC

        180 TCCTCCTCCC


Statistics
Matches: 26,  Mismatches: 2, Indels: 2
        0.87            0.07        0.07

Matches are distributed among these distances:
  29    4  0.15
  30   22  0.85

ACGTcount: A:0.20, C:0.49, G:0.12, T:0.19


Consensus pattern (30 bp):   
CCACCACCACCGCCTTACTATGCTGCACCC

Found at i:2483 original size:17 final size:17

Alignment explanation


    Indices: 2461--2496  Score: 63
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       2451 GTAGTATGTA

                      *      
       2461 GTGTCATTCATAACATT
          1 GTGTCATTCACAACATT

                             
       2478 GTGTCATTCACAACATT
          1 GTGTCATTCACAACATT

              
       2495 GT
          1 GT

       2497 AAGTCATAGC


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  17   18  1.00

ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39


Consensus pattern (17 bp):   
GTGTCATTCACAACATT
Done.