Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02389.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1702
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36


Found at i:1640 original size:15 final size:16

Alignment explanation


    Indices: 1620--1652  Score: 50
    Period size: 15  Copynumber: 2.1  Consensus size: 16

       1610 AATTTTGTCA

                            
       1620 TCTTTTTTATTTT-TT
          1 TCTTTTTTATTTTCTT

                    *       
       1635 TCTTTTTTCTTTTCTT
          1 TCTTTTTTATTTTCTT

              
       1651 TC
          1 TC

       1653 CTCTTTTTTG


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  15   12  0.75
  16    4  0.25

ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82


Consensus pattern (16 bp):   
TCTTTTTTATTTTCTT
Done.