Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02393.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1846
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.32


Found at i:1390 original size:136 final size:136

Alignment explanation


    Indices: 1110--1394  Score: 509
    Period size: 135  Copynumber: 2.1  Consensus size: 136

       1100 GAGTAGTCTC

                                                                             
       1110 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
          1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC

             *                                                     *         
       1175 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATTGAAAAGGGCTCTGGTCCAGTACCA
         66 TATTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATTGAAAAGGGCTCTGGCCCAGTACCA

                  
       1240 CTGTTA
        131 CTGTTA

                                    *                                        
       1246 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
          1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC

                                                                             
       1310 TATTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
         66 TATTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAAT-TGAAAAGGGCTCTGGCCCAGTACC

                   
       1375 ACTGTTA
        130 ACTGTTA

              **         
       1382 CCTGAATGGGCTT
          1 CCCAAATGGGCTT

       1395 AGGCCCAATA


Statistics
Matches: 143,  Mismatches: 5, Indels: 2
        0.95            0.03        0.01

Matches are distributed among these distances:
 135   82  0.57
 136   61  0.43

ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32


Consensus pattern (136 bp):   
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TATTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Done.