Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02397.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 609

Length: 1016
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37


Found at i:409 original size:21 final size:20

Alignment explanation


    Indices: 371--410  Score: 55
    Period size: 20  Copynumber: 1.9  Consensus size: 20

        361 ACGTTCCTCT

                                
        371 TATTTCTTTTTTTTTCTTTA
          1 TATTTCTTTTTTTTTCTTTA

                                 
        391 TATTT-TTTTCTTCTTTCTTT
          1 TATTTCTTTT-TT-TTTCTTT

        411 GACTTTGTTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  19    4  0.22
  20    7  0.39
  21    7  0.39

ACGTcount: A:0.07, C:0.12, G:0.00, T:0.80


Consensus pattern (20 bp):   
TATTTCTTTTTTTTTCTTTA
Done.