Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02400.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1749
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.33


Found at i:667 original size:14 final size:14

Alignment explanation


    Indices: 648--676  Score: 58
    Period size: 14  Copynumber: 2.1  Consensus size: 14

        638 GGTAGAAATA

                          
        648 TAAATTTCAAGCAT
          1 TAAATTTCAAGCAT

                          
        662 TAAATTTCAAGCAT
          1 TAAATTTCAAGCAT

             
        676 T
          1 T

        677 CTGTTGACCT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.41, C:0.14, G:0.07, T:0.38


Consensus pattern (14 bp):   
TAAATTTCAAGCAT
Done.