Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02418.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3686
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33


Found at i:1235 original size:23 final size:23

Alignment explanation


    Indices: 1193--1237  Score: 63
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       1183 CAAAGAACCA

                  *       **       
       1193 TATCGATAAGCTCATGAAGAGCT
          1 TATCGAAAAGCTCACAAAGAGCT

                                  
       1216 TATCGAAAAGCTCACAAAGAGC
          1 TATCGAAAAGCTCACAAAGAGC

       1238 CATGTAACGG


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  23   19  1.00

ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20


Consensus pattern (23 bp):   
TATCGAAAAGCTCACAAAGAGCT

Found at i:2455 original size:17 final size:16

Alignment explanation


    Indices: 2433--2466  Score: 50
    Period size: 17  Copynumber: 2.1  Consensus size: 16

       2423 TTTGAATTCC

                   *         
       2433 ATAGCTATTAGATACTT
          1 ATAGCTACTAGA-ACTT

                            
       2450 ATAGCTACTAGAACTT
          1 ATAGCTACTAGAACTT

             
       2466 A
          1 A

       2467 ACTTTTTCAT


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  16    5  0.31
  17   11  0.69

ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35


Consensus pattern (16 bp):   
ATAGCTACTAGAACTT
Done.