Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02419.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 884

Length: 1474
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30


Found at i:123 original size:6 final size:6

Alignment explanation


    Indices: 105--149  Score: 63
    Period size: 6  Copynumber: 7.3  Consensus size: 6

         95 GACTCTTCTT

                                     *        *                 
        105 TTCCCC TTTCCCC TTCCCC TTCGCC TTCCCA TTCCCC TTCCCC TT
          1 TTCCCC -TTCCCC TTCCCC TTCCCC TTCCCC TTCCCC TTCCCC TT

        150 GGGTTGCAAA


Statistics
Matches: 34,  Mismatches: 4, Indels: 1
        0.87            0.10        0.03

Matches are distributed among these distances:
   6   28  0.82
   7    6  0.18

ACGTcount: A:0.02, C:0.58, G:0.02, T:0.38


Consensus pattern (6 bp):   
TTCCCC

Done.