Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02421.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5008
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29


Found at i:3970 original size:59 final size:59

Alignment explanation


    Indices: 3878--4078  Score: 219
    Period size: 59  Copynumber: 3.4  Consensus size: 59

       3868 CCCTATATAG

                                    *                *                   
       3878 CACTTGTTCCCAAGTCCAAGCAACTC-GTACTCAAA-TCCTATGCATTCATTCTATTCTAA
          1 CACTTGTTCCCAAGTCCAAGCAACACAG-ACTCAAACT-CTTTGCATTCATTCTATTCTAA

                       *                *               *     * *      
       3937 CACTTGTTCCCTAGTCCAAGCAACACAGGCTCAAACTCTTTGCACTCATTTTTTTCTAA
          1 CACTTGTTCCCAAGTCCAAGCAACACAGACTCAAACTCTTTGCATTCATTCTATTCTAA

                     *       *         *                   *         *  
       3996 CACTTGTTCACAAGTCCTAGCAACACATACTCAAACTCTTTGCATTTGA-TCTATTCCAA
          1 CACTTGTTCCCAAGTCCAAGCAACACAGACTCAAACTCTTTGCA-TTCATTCTATTCTAA

            *         *   *         
       4055 GACTTGTTCCTAAGGCCAAGCAAC
          1 CACTTGTTCCCAAGTCCAAGCAAC

       4079 TAGAATGTCT


Statistics
Matches: 117,  Mismatches: 22, Indels: 6
        0.81            0.15        0.04

Matches are distributed among these distances:
  59  113  0.97
  60    4  0.03

ACGTcount: A:0.28, C:0.30, G:0.10, T:0.31


Consensus pattern (59 bp):   
CACTTGTTCCCAAGTCCAAGCAACACAGACTCAAACTCTTTGCATTCATTCTATTCTAA
Done.