Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02424.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7724
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.31


Found at i:3915 original size:96 final size:96

Alignment explanation


    Indices: 3749--3939  Score: 274
    Period size: 96  Copynumber: 2.0  Consensus size: 96

       3739 GTGTCCGAGG

                    *     *     *           * *                    *         
       3749 AAGTCTGTTATCGATGGGAATGATCGAGCAGATACGGAGCCCAAGAAGCTTGGTTTGAGCAAGGG
          1 AAGTCTGTCATCGAAGGGAACGATCGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG

                                           
       3814 AAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
         66 AAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC

                                  * *                                  *     
       3845 AAGTCTGTCATCGAAGGGAACGGTGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGTAAGGG
          1 AAGTCTGTCATCGAAGGGAACGATCGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG

            *              *     *        
       3910 TAAAGCCGAAGCCAATAGGGCTAAGAGGAG
         66 AAAAGCCGAAGCCAAGAGGGCAAAGAGGAG

       3940 TAAAAAGAAG


Statistics
Matches: 83,  Mismatches: 12, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  96   83  1.00

ACGTcount: A:0.34, C:0.17, G:0.35, T:0.14


Consensus pattern (96 bp):   
AAGTCTGTCATCGAAGGGAACGATCGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
AAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC

Found at i:7252 original size:2 final size:2

Alignment explanation


    Indices: 7245--7272  Score: 56
    Period size: 2  Copynumber: 14.0  Consensus size: 2

       7235 ATGGAATTGT

                                                     
       7245 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA

       7273 AGATTTGTGT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   26  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Done.