Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02425.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3712
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36


Found at i:860 original size:19 final size:19

Alignment explanation


    Indices: 819--867  Score: 57
    Period size: 19  Copynumber: 2.6  Consensus size: 19

        809 TAAGACAAAA

                               
        819 AAAT-TTAAATATCAAATC
          1 AAATATTAAATATCAAATC

            *                   
        837 GAATATTAAA-ATCAAACTC
          1 AAATATTAAATATCAAA-TC

                 *      
        856 AAATACTAAATA
          1 AAATATTAAATA

        868 GTATATTAAC


Statistics
Matches: 25,  Mismatches: 3, Indels: 4
        0.78            0.09        0.12

Matches are distributed among these distances:
  18    9  0.36
  19   15  0.60
  20    1  0.04

ACGTcount: A:0.57, C:0.12, G:0.02, T:0.29


Consensus pattern (19 bp):   
AAATATTAAATATCAAATC
Done.