Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02430.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 747

Length: 1245
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29


Found at i:34 original size:22 final size:21

Alignment explanation


    Indices: 6--46  Score: 57
    Period size: 22  Copynumber: 1.9  Consensus size: 21

          1 GATGT

                                   
          6 TTTTAA-GTTGTTTGTAAGATTC
          1 TTTTAAGGTT-TTTG-AAGATTC

                               
         28 TTTTAAGGTTTTTGAAGAT
          1 TTTTAAGGTTTTTGAAGAT

         47 GGGTAGTGAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  21    5  0.28
  22   10  0.56
  23    3  0.17

ACGTcount: A:0.24, C:0.02, G:0.20, T:0.54


Consensus pattern (21 bp):   
TTTTAAGGTTTTTGAAGATTC
Done.