Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02440.F9

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3083
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31


Found at i:886 original size:6 final size:6

Alignment explanation


    Indices: 869--902  Score: 50
    Period size: 6  Copynumber: 5.5  Consensus size: 6

        859 CTATCGTGAC

                    *                              
        869 AGAAAA AAAAAA AGAAAA AGAAAA AGAAAGA AGA
          1 AGAAAA AGAAAA AGAAAA AGAAAA AGAAA-A AGA

        903 GTGTTTAGTA


Statistics
Matches: 25,  Mismatches: 2, Indels: 1
        0.89            0.07        0.04

Matches are distributed among these distances:
   6   21  0.84
   7    4  0.16

ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00


Consensus pattern (6 bp):   
AGAAAA
Done.