Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02448.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1834
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.38


Found at i:100 original size:21 final size:20

Alignment explanation


    Indices: 71--113  Score: 59
    Period size: 21  Copynumber: 2.1  Consensus size: 20

         61 ATATTAAGAA

                                 
         71 TATTATTAAATTATATATTAT
          1 TATTATTAAATTAT-TATTAT

                *          *    
         92 TATTGTTAAATTATTTTTAT
          1 TATTATTAAATTATTATTAT

              
        112 TA
          1 TA

        114 AATTATATTT


Statistics
Matches: 20,  Mismatches: 2, Indels: 1
        0.87            0.09        0.04

Matches are distributed among these distances:
  20    7  0.35
  21   13  0.65

ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60


Consensus pattern (20 bp):   
TATTATTAAATTATTATTAT

Found at i:349 original size:16 final size:16

Alignment explanation


    Indices: 306--357  Score: 59
    Period size: 16  Copynumber: 3.2  Consensus size: 16

        296 GAATTGCTAC

                 *          
        306 TACAGTTCTATTCTAT
          1 TACAGCTCTATTCTAT

              * *  *        
        322 TATAACTTTATTCTAT
          1 TACAGCTCTATTCTAT

                         *  
        338 TACAGCTCTATTCCAT
          1 TACAGCTCTATTCTAT

                
        354 TACA
          1 TACA

        358 CTGAACCAAA


Statistics
Matches: 28,  Mismatches: 8, Indels: 0
        0.78            0.22        0.00

Matches are distributed among these distances:
  16   28  1.00

ACGTcount: A:0.29, C:0.21, G:0.04, T:0.46


Consensus pattern (16 bp):   
TACAGCTCTATTCTAT
Done.