Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02460.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3311
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34


Found at i:904 original size:25 final size:25

Alignment explanation


    Indices: 845--895  Score: 102
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        835 TATAATCAAG

                                     
        845 TATGCATTTTAAAGTTGAATAGGAA
          1 TATGCATTTTAAAGTTGAATAGGAA

                                     
        870 TATGCATTTTAAAGTTGAATAGGAA
          1 TATGCATTTTAAAGTTGAATAGGAA

             
        895 T
          1 T

        896 GCACGTTTTT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   26  1.00

ACGTcount: A:0.39, C:0.04, G:0.20, T:0.37


Consensus pattern (25 bp):   
TATGCATTTTAAAGTTGAATAGGAA
Done.