Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00671.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4441
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26


Found at i:1828 original size:21 final size:21

Alignment explanation


    Indices: 1803--1846  Score: 52
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       1793 ATGAGTGTGA

                                 
       1803 TGAGTACCCTGAATCTGGTGG
          1 TGAGTACCCTGAATCTGGTGG

                 ** *   *        
       1824 TGAGTGTCTTGACTCTGGTGG
          1 TGAGTACCCTGAATCTGGTGG

              
       1845 TG
          1 TG

       1847 TGAGAGAACA


Statistics
Matches: 19,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.14, C:0.16, G:0.36, T:0.34


Consensus pattern (21 bp):   
TGAGTACCCTGAATCTGGTGG
Done.