Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02472.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3712
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29


Found at i:491 original size:30 final size:30

Alignment explanation


    Indices: 455--518  Score: 101
    Period size: 30  Copynumber: 2.1  Consensus size: 30

        445 TCTTTGACAG

                                * *       
        455 CTCATGCACCTTCATCAACAGTCCAATCTT
          1 CTCATGCACCTTCATCAACACTACAATCTT

                               *          
        485 CTCATGCACCTTCATCAACCCTACAATCTT
          1 CTCATGCACCTTCATCAACACTACAATCTT

                
        515 CTCA
          1 CTCA

        519 ACCTGTTTTG


Statistics
Matches: 31,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  30   31  1.00

ACGTcount: A:0.27, C:0.39, G:0.05, T:0.30


Consensus pattern (30 bp):   
CTCATGCACCTTCATCAACACTACAATCTT

Found at i:3487 original size:47 final size:47

Alignment explanation


    Indices: 3415--3509  Score: 181
    Period size: 47  Copynumber: 2.0  Consensus size: 47

       3405 AAATATGGAC

                                *                          
       3415 TCAACAAATGAGCTTGGACAGAATATAAGGTCTTTTTTTAAACGTGT
          1 TCAACAAATGAGCTTGGACAAAATATAAGGTCTTTTTTTAAACGTGT

                                                           
       3462 TCAACAAATGAGCTTGGACAAAATATAAGGTCTTTTTTTAAACGTGT
          1 TCAACAAATGAGCTTGGACAAAATATAAGGTCTTTTTTTAAACGTGT

             
       3509 T
          1 T

       3510 GAGCCTAGTA


Statistics
Matches: 47,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  47   47  1.00

ACGTcount: A:0.35, C:0.13, G:0.18, T:0.35


Consensus pattern (47 bp):   
TCAACAAATGAGCTTGGACAAAATATAAGGTCTTTTTTTAAACGTGT
Done.