Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02487.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5255
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31


Found at i:3118 original size:13 final size:14

Alignment explanation


    Indices: 3090--3118  Score: 51
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       3080 TCTTGGTGAC

                          
       3090 ATTGGTTAATTCAT
          1 ATTGGTTAATTCAT

                          
       3104 ATTGGTTAA-TCAT
          1 ATTGGTTAATTCAT

              
       3117 AT
          1 AT

       3119 CAAGTCTTTA


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13    6  0.40
  14    9  0.60

ACGTcount: A:0.31, C:0.07, G:0.14, T:0.48


Consensus pattern (14 bp):   
ATTGGTTAATTCAT
Done.