Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02488.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2865
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.35


Found at i:97 original size:11 final size:12

Alignment explanation


    Indices: 70--99  Score: 53
    Period size: 12  Copynumber: 2.6  Consensus size: 12

         60 CTATTGATCT

                        
         70 TTTCCTTTTTCC
          1 TTTCCTTTTTCC

                        
         82 TTTCCTTTTTCC
          1 TTTCCTTTTTCC

                   
         94 -TTCCTT
          1 TTTCCTT

        100 GCTTCATTCT


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  11    6  0.33
  12   12  0.67

ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67


Consensus pattern (12 bp):   
TTTCCTTTTTCC
Done.