Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02497.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 566

Length: 944
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.31


Found at i:924 original size:24 final size:24

Alignment explanation


    Indices: 897--944  Score: 78
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        887 AAATCCATAA

                            *       
        897 TTACAATATAATTGCATATAAAAG
          1 TTACAATATAATTGCAAATAAAAG

                          *         
        921 TTACAATATAATTGTAAATAAAAG
          1 TTACAATATAATTGCAAATAAAAG


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  24   22  1.00

ACGTcount: A:0.52, C:0.06, G:0.08, T:0.33


Consensus pattern (24 bp):   
TTACAATATAATTGCAAATAAAAG
Done.