Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02502.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 522

Length: 870
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.36


Found at i:706 original size:33 final size:33

Alignment explanation


    Indices: 662--730  Score: 102
    Period size: 33  Copynumber: 2.1  Consensus size: 33

        652 AGTGTCAGAC

                                             
        662 GCGTGGAGCGTGGTGACCAAGGCTGAGGGGCAT
          1 GCGTGGAGCGTGGTGACCAAGGCTGAGGGGCAT

                  *        **             *  
        695 GCGTGGGGCGTGGTGGTCAAGGCTGAGGGGTAT
          1 GCGTGGAGCGTGGTGACCAAGGCTGAGGGGCAT

               
        728 GCG
          1 GCG

        731 GCGGCTGAAG


Statistics
Matches: 32,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  33   32  1.00

ACGTcount: A:0.14, C:0.16, G:0.52, T:0.17


Consensus pattern (33 bp):   
GCGTGGAGCGTGGTGACCAAGGCTGAGGGGCAT
Done.