Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02515.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 856

Length: 1427
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.31


Found at i:915 original size:12 final size:12

Alignment explanation


    Indices: 898--940  Score: 77
    Period size: 12  Copynumber: 3.6  Consensus size: 12

        888 TAAGGGAAGA

                        
        898 GAGCCCAAGCAT
          1 GAGCCCAAGCAT

                     *  
        910 GAGCCCAAGTAT
          1 GAGCCCAAGCAT

                        
        922 GAGCCCAAGCAT
          1 GAGCCCAAGCAT

                   
        934 GAGCCCA
          1 GAGCCCA

        941 GGTATGTCGC


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  12   29  1.00

ACGTcount: A:0.33, C:0.33, G:0.26, T:0.09


Consensus pattern (12 bp):   
GAGCCCAAGCAT

Found at i:930 original size:24 final size:24

Alignment explanation


    Indices: 898--946  Score: 89
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        888 TAAGGGAAGA

                                    
        898 GAGCCCAAGCATGAGCCCAAGTAT
          1 GAGCCCAAGCATGAGCCCAAGTAT

                               *    
        922 GAGCCCAAGCATGAGCCCAGGTAT
          1 GAGCCCAAGCATGAGCCCAAGTAT

             
        946 G
          1 G

        947 TCGCCTTTCA


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.31, C:0.29, G:0.29, T:0.12


Consensus pattern (24 bp):   
GAGCCCAAGCATGAGCCCAAGTAT
Done.