Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02525.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3985
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32


Found at i:1262 original size:120 final size:118

Alignment explanation


    Indices: 1015--1264  Score: 265
    Period size: 120  Copynumber: 2.1  Consensus size: 118

       1005 GGCTTATTTA

                                       *                          * *    *   
       1015 TGAAAGTAATGAATGAGAAAAAGGTTCGAAAGATTAATGAAAGATTAAAGGAACTTTTTTGTTAA
          1 TGAAAGTAATGAATGAGAAAAAGGTTCAAAAGATTAATGAAAGATTAAAGGAACATATTTGCTAA

                      *                                      **  
       1080 TACATTGAACCTAAAGATAGAACCAATTAGCTATTTACTTGCAGGCTTATTTC
         66 TACATTGAACATAAAGATAGAACCAATTAGCTATTTACTTGCAGGCTTACCTC

                *                                   *      *                 
       1133 TGAAGGTAATGAATGAGAAAAAAATGGTGT-AAAAGATTAGTGAAAGTTTAAAGGAA-ATATTTG
          1 TGAAAGTAATGAATGAG--AAAAA-GGT-TCAAAAGATTAATGAAAGATTAAAGGAACATATTTG

                                   *   *  *           *    *      *   *
       1196 CTAATACA-TGAAACATAAAGATGGAATCAGTTAG-TAATTTTCTTGTAGGCTTGCCTG
         62 CTAATACATTG-AACATAAAGATAGAACCAATTAGCT-ATTTACTTGCAGGCTTACCTC

                        
       1253 TGAAAGTAATGA
          1 TGAAAGTAATGA

       1265 TTTTGGATGA


Statistics
Matches: 108,  Mismatches: 18, Indels: 10
        0.79            0.13        0.07

Matches are distributed among these distances:
 118   16  0.15
 119    3  0.03
 120   62  0.57
 121   26  0.24
 122    1  0.01

ACGTcount: A:0.41, C:0.08, G:0.20, T:0.30


Consensus pattern (118 bp):   
TGAAAGTAATGAATGAGAAAAAGGTTCAAAAGATTAATGAAAGATTAAAGGAACATATTTGCTAA
TACATTGAACATAAAGATAGAACCAATTAGCTATTTACTTGCAGGCTTACCTC
Done.