Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02525.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3710
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32


Found at i:987 original size:120 final size:118

Alignment explanation


    Indices: 740--989  Score: 265
    Period size: 120  Copynumber: 2.1  Consensus size: 118

        730 GGCTTATTTA

                                       *                          * *    *   
        740 TGAAAGTAATGAATGAGAAAAAGGTTCGAAAGATTAATGAAAGATTAAAGGAACTTTTTTGTTAA
          1 TGAAAGTAATGAATGAGAAAAAGGTTCAAAAGATTAATGAAAGATTAAAGGAACATATTTGCTAA

                      *                                      **  
        805 TACATTGAACCTAAAGATAGAACCAATTAGCTATTTACTTGCAGGCTTATTTC
         66 TACATTGAACATAAAGATAGAACCAATTAGCTATTTACTTGCAGGCTTACCTC

                *                                   *      *                 
        858 TGAAGGTAATGAATGAGAAAAAAATGGTGT-AAAAGATTAGTGAAAGTTTAAAGGAA-ATATTTG
          1 TGAAAGTAATGAATGAG--AAAAA-GGT-TCAAAAGATTAATGAAAGATTAAAGGAACATATTTG

                                   *   *  *           *    *      *   *
        921 CTAATACA-TGAAACATAAAGATGGAATCAGTTAG-TAATTTTCTTGTAGGCTTGCCTG
         62 CTAATACATTG-AACATAAAGATAGAACCAATTAGCT-ATTTACTTGCAGGCTTACCTC

                        
        978 TGAAAGTAATGA
          1 TGAAAGTAATGA

        990 TTTTGGATGA


Statistics
Matches: 108,  Mismatches: 18, Indels: 10
        0.79            0.13        0.07

Matches are distributed among these distances:
 118   16  0.15
 119    3  0.03
 120   62  0.57
 121   26  0.24
 122    1  0.01

ACGTcount: A:0.41, C:0.08, G:0.20, T:0.30


Consensus pattern (118 bp):   
TGAAAGTAATGAATGAGAAAAAGGTTCAAAAGATTAATGAAAGATTAAAGGAACATATTTGCTAA
TACATTGAACATAAAGATAGAACCAATTAGCTATTTACTTGCAGGCTTACCTC
Done.