Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02536.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5803
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.31


Found at i:1276 original size:21 final size:21

Alignment explanation


    Indices: 1252--1304  Score: 61
    Period size: 21  Copynumber: 2.5  Consensus size: 21

       1242 GAAGCTGGAG

                *                
       1252 AATTTCAAGAATGTTCGGATC
          1 AATTACAAGAATGTTCGGATC

                 *         *     
       1273 AATTAGAAGAATGTTTGGATC
          1 AATTACAAGAATGTTCGGATC

            *    *     
       1294 GATTAGAAGAA
          1 AATTACAAGAA

       1305 AGTAGTTCAG


Statistics
Matches: 28,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  21   28  1.00

ACGTcount: A:0.40, C:0.08, G:0.23, T:0.30


Consensus pattern (21 bp):   
AATTACAAGAATGTTCGGATC
Done.