Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02544.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 767

Length: 1279
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27


Found at i:1206 original size:13 final size:13

Alignment explanation


    Indices: 1188--1212  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       1178 TTAAGCCAAG

                         
       1188 AACAGAGAACAAA
          1 AACAGAGAACAAA

                        
       1201 AACAGAGAACAA
          1 AACAGAGAACAA

       1213 TGCGAGGAGC


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.68, C:0.16, G:0.16, T:0.00


Consensus pattern (13 bp):   
AACAGAGAACAAA
Done.