Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02571.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1992
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31


Found at i:1315 original size:2 final size:2

Alignment explanation


    Indices: 1308--1341  Score: 59
    Period size: 2  Copynumber: 17.0  Consensus size: 2

       1298 ATCAGTCTTT

                                                    *         
       1308 CA CA CA CA CA CA CA CA CA CA CA CA CA CG CA CA CA
          1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA

       1342 TGTATTAATT


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   30  1.00

ACGTcount: A:0.47, C:0.50, G:0.03, T:0.00


Consensus pattern (2 bp):   
CA

Found at i:1520 original size:18 final size:19

Alignment explanation


    Indices: 1486--1522  Score: 58
    Period size: 19  Copynumber: 2.0  Consensus size: 19

       1476 TCCCGACACT

                               
       1486 ATAGCTTCTCCTTCCCATG
          1 ATAGCTTCTCCTTCCCATG

                      *        
       1505 ATAGCTTCT-GTTCCCATG
          1 ATAGCTTCTCCTTCCCATG

       1523 GTTCTTCCAT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  18    8  0.47
  19    9  0.53

ACGTcount: A:0.16, C:0.32, G:0.14, T:0.38


Consensus pattern (19 bp):   
ATAGCTTCTCCTTCCCATG
Done.