Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02575.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3723
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31


Found at i:2524 original size:2 final size:2

Alignment explanation


    Indices: 2517--2549  Score: 57
    Period size: 2  Copynumber: 16.5  Consensus size: 2

       2507 GTGAAGGTGG

                                           *                 
       2517 GT GT GT GT GT GT GT GT GT GT GG GT GT GT GT GT G
          1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT G

       2550 GGTCATAGCA


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.00, C:0.00, G:0.55, T:0.45


Consensus pattern (2 bp):   
GT

Found at i:2550 original size:12 final size:12

Alignment explanation


    Indices: 2513--2552  Score: 66
    Period size: 12  Copynumber: 3.5  Consensus size: 12

       2503 CAATGTGAAG

                        
       2513 GTGGGTGTGTGT
          1 GTGGGTGTGTGT

                        
       2525 GT--GTGTGTGT
          1 GTGGGTGTGTGT

                        
       2535 GTGGGTGTGTGT
          1 GTGGGTGTGTGT

                  
       2547 GTGGGT
          1 GTGGGT

       2553 CATAGCATAG


Statistics
Matches: 26,  Mismatches: 0, Indels: 4
        0.87            0.00        0.13

Matches are distributed among these distances:
  10   10  0.38
  12   16  0.62

ACGTcount: A:0.00, C:0.00, G:0.57, T:0.42


Consensus pattern (12 bp):   
GTGGGTGTGTGT
Done.