Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02587.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 795

Length: 1326
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30


Found at i:1026 original size:137 final size:137

Alignment explanation


    Indices: 781--1202  Score: 794
    Period size: 137  Copynumber: 3.1  Consensus size: 137

        771 GAGTAGTCTC

                                    *       *                                
        781 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
          1 CCCAAATGGGCTTGCATATGTTTACTGATGTTACATGTATTTTGAAATGGGCCTATGGGCCATAC

                                                                             
        845 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
         66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC

                   
        910 ACTGTTA
        131 ACTGTTA

                                                                             
        917 CCCAAATGGGCTTGCATATGTTTACTGATGTTACATGTATTTTGAAATGGGCCTATGGGCCATAC
          1 CCCAAATGGGCTTGCATATGTTTACTGATGTTACATGTATTTTGAAATGGGCCTATGGGCCATAC

                                                                             
        982 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
         66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC

                   
       1047 ACTGTTA
        131 ACTGTTA

                                                                             
       1054 CCCAAATGGGCTTGCATATGTTTACTGATGTTACATGTATTTTGAAATGGGCCTATGGGCCATAC
          1 CCCAAATGGGCTTGCATATGTTTACTGATGTTACATGTATTTTGAAATGGGCCTATGGGCCATAC

                                                                             
       1119 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
         66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC

                   
       1184 A-TGTTA
        131 ACTGTTA

              **         
       1190 CCTGAATGGGCTT
          1 CCCAAATGGGCTT

       1203 AGGCCCAATA


Statistics
Matches: 281,  Mismatches: 4, Indels: 2
        0.98            0.01        0.01

Matches are distributed among these distances:
 136   36  0.13
 137  245  0.87

ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32


Consensus pattern (137 bp):   
CCCAAATGGGCTTGCATATGTTTACTGATGTTACATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA

Done.