Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02595.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 857

Length: 1429
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37


Found at i:531 original size:17 final size:17

Alignment explanation


    Indices: 509--543  Score: 61
    Period size: 17  Copynumber: 2.1  Consensus size: 17

        499 TTGAATTAGT

                    *        
        509 TAAAAATAGCTTGAAAA
          1 TAAAAATAACTTGAAAA

                             
        526 TAAAAATAACTTGAAAA
          1 TAAAAATAACTTGAAAA

             
        543 T
          1 T

        544 GGTTCAATGA


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.60, C:0.06, G:0.09, T:0.26


Consensus pattern (17 bp):   
TAAAAATAACTTGAAAA
Done.