Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02600.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2312
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32


Found at i:57 original size:5 final size:5

Alignment explanation


    Indices: 36--70  Score: 52
    Period size: 5  Copynumber: 6.8  Consensus size: 5

         26 TCGGTCACGC

                       *                             
         36 TTCTT TTCATC TTCTT TTCTT TTCTT TTCTT TTCT
          1 TTCTT TTC-TT TTCTT TTCTT TTCTT TTCTT TTCT

         71 CTGACACTAA


Statistics
Matches: 27,  Mismatches: 2, Indels: 2
        0.87            0.06        0.06

Matches are distributed among these distances:
   5   23  0.85
   6    4  0.15

ACGTcount: A:0.03, C:0.23, G:0.00, T:0.74


Consensus pattern (5 bp):   
TTCTT

Done.