Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02613.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1924
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.28


Found at i:262 original size:33 final size:30

Alignment explanation


    Indices: 216--284  Score: 84
    Period size: 30  Copynumber: 2.2  Consensus size: 30

        206 GGTCCCACCT

                                       *     
        216 GCAGTTGTACCACCAACTATTGCTCCACTACCA
          1 GCAGTTGTACCA-C--CTATTGCTCCAATACCA

                    *                    *
        249 GCAGTTGTGCCACCTATTGCTCCAATACCT
          1 GCAGTTGTACCACCTATTGCTCCAATACCA

                  
        279 GCAGTT
          1 GCAGTT

        285 CGCCCTCCCG


Statistics
Matches: 33,  Mismatches: 3, Indels: 3
        0.85            0.08        0.08

Matches are distributed among these distances:
  30   21  0.64
  32    1  0.03
  33   11  0.33

ACGTcount: A:0.23, C:0.33, G:0.16, T:0.28


Consensus pattern (30 bp):   
GCAGTTGTACCACCTATTGCTCCAATACCA
Done.