Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g02630.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3848
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.29


Found at i:42 original size:11 final size:11

Alignment explanation


    Indices: 26--61  Score: 54
    Period size: 11  Copynumber: 3.3  Consensus size: 11

         16 AAGGCCCAAG

                       
         26 AACCAAAAAAA
          1 AACCAAAAAAA

                       
         37 AACCAAAAAAA
          1 AACCAAAAAAA

              **       
         48 AAAAAAAAAAA
          1 AACCAAAAAAA

               
         59 AAC
          1 AAC

         62 AAACTATGAG


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  11   22  1.00

ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00


Consensus pattern (11 bp):   
AACCAAAAAAA

Found at i:297 original size:18 final size:18

Alignment explanation


    Indices: 271--305  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        261 GAATAACGAT

                              
        271 GACGACGACGAAGAAGAC
          1 GACGACGACGAAGAAGAC

                *            
        289 GACGCCGACGAAGAAGA
          1 GACGACGACGAAGAAGA

        306 AGAACAAGAG


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.43, C:0.23, G:0.34, T:0.00


Consensus pattern (18 bp):   
GACGACGACGAAGAAGAC
Done.